PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03662g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 511aa    MW: 56637.3 Da    PI: 4.5281
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03662g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.4e-36261172102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k+y++++d+++++++sw  ++nsfvv+d+ +fak++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Niben101Scf03662g00006.1  26 FLVKTYDMVDDPSTDKIVSWGPTNNSFVVWDPPDFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVEPDR---------WEFANEGF 101
                               9********************999******************************************99.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                                +g+k+ll++i r+k 
  Niben101Scf03662g00006.1 102 LRGQKHLLRSISRRKP 117
                               *************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-3521115IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-4022115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6222115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGSTFGDSGG GGSPAPMPIA NTPPPFLVKT YDMVDDPSTD KIVSWGPTNN SFVVWDPPDF  60
AKDLLPKYFK HNNFSSFVRQ LNTYGFRKVE PDRWEFANEG FLRGQKHLLR SISRRKPAHG  120
HTQQQLHGQS ASVGACVEVG KFGLEEEVER LKRDKNVLMQ ELVKLRQQQQ TTDNQMQIMV  180
QSLQVMEQRQ QQMMSFLAKV VNSPGFLAQF VQQQNDSNRH AMEGNKKRRI KQDFPSDDLS  240
VCPADGQIVK YQPVMNEAAK AILRQIMKQD SSPKFENFSN SPESVLICDG SPQSNALDSG  300
SSNRVSGVTL REVPPTSAQP FASATSAVTG QSSSASISEI QSSPLCKSFE IADIQFSDTR  360
SLVGGHDLPP VSLSPSDMTM PELSQIQEIV PVNSMDTDGS EMENGSFMNP TLDGNGNLPL  420
EIDTFSPDPQ NEWQSTLMDD IGELPSLGDP FWEKFLQSPL PTETEEMDPV EIEDIKTTET  480
EPLENGWDKA QHMEHLTGQM ELLTSSSKKV G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-282411518120Heat shock factor protein 1
5d5v_D8e-282411527129Heat shock factor protein 1
5d5v_B8e-282411527129Heat shock factor protein 1
5d5u_B8e-282411527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224231NKKRRIKQ
2225230KKRRIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781208.10.0PREDICTED: LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0V0IK890.0A0A0V0IK89_SOLCH; Putative heat shock factor protein HSF8-like
STRINGPGSC0003DMT4000460000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-126heat shock transcription factor A1D